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The Gaggle paper in BMC Bioinformatics

Welcome to the Gaggle web site!

Gaggle News

Read the latest Gaggle news here.

Gaggle Workshop

The second Gaggle workshop is planned for August 25-26th (Monday and Tuesday) 2008.

  • visualization and analysis
  • data management
  • messaging architectures
  • research applications
More details.

Firegoose

Firegoose updates for compatibility with Mozilla Firefox 3.0 now in beta release. (See development release version 0.8.x.)

MatGoose

MatGoose (now in beta release) integrates MATLAB into the Gaggle environment.

The practice of systems biology depends upon many software tools, operating on many kinds of data from many different sources. The Gaggle is a framework for exchanging data between independently developed software tools and databases to enable interactive exploration of systems biology data. Read more about the Gaggle.

Gaggle API

Important Notice! Read about what's new in the latest (2007-04) release of the Gaggle API. You may need to reinstall Firegoose and R Goose.

Software Tools and Databases

Currently supported geese include:

  • MeV: MultiExperiment Viewer
  • a DataMatrixViewer for loading &: navigating, and plotting high-throughput experimental data (microarray, proteomics, MPSS, ...)
  • R -- an indispensible tool for statistics, graphics, and data manipulation
  • Cytoscape -- the standard software for the graphical exploration of networks
  • Firegoose -- a Firefox toolbar that enables data exchange between web resources and the Gaggle framework. Firegoose supports:
© 2006, Institute for Systems Biology, All Rights Reserved
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