org.systemsbiology.gaggle.core.datatypes
Class Cluster

java.lang.Object
  org.systemsbiology.gaggle.core.datatypes.Cluster

All Implemented Interfaces:

java.io.Serializable, GaggleData

public class Cluster
extends java.lang.Object
implements GaggleData

An object encapsulating the notion "these items (genes, proteins, etc.) are interesting in these conditions".

See Also:

Serialized Form

Constructor Summary

Cluster()

Cluster(java.lang.String species, java.lang.String[] rowNames, java.lang.String[] columnNames)

Cluster(java.lang.String name, java.lang.String species, java.lang.String[] rowNames, java.lang.String[] columnNames)

Method Summary

java.lang.String[]	getColumnNames()
Tuple	getMetadata() Every GaggleData object contains a Tuple which can contain optional metadata.
java.lang.String	getName() Returns the name of this GaggleData object
java.lang.String[]	getRowNames()
java.lang.String	getSpecies() Returns the species of this GaggleData object
void	setColumnNames(java.lang.String[] columnNames)
void	setMetadata(Tuple metadata)
void	setName(java.lang.String name)
void	setRowNames(java.lang.String[] rowNames)
void	setSpecies(java.lang.String species)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Cluster

public Cluster()

Cluster

public Cluster(java.lang.String species,
               java.lang.String[] rowNames,
               java.lang.String[] columnNames)

Cluster

public Cluster(java.lang.String name,
               java.lang.String species,
               java.lang.String[] rowNames,
               java.lang.String[] columnNames)

Method Detail

getName

public java.lang.String getName()

Description copied from interface: GaggleData

Returns the name of this GaggleData object

Specified by:

getName in interface GaggleData

Returns:

the name of this GaggleData object

getSpecies

public java.lang.String getSpecies()

Description copied from interface: GaggleData

Returns the species of this GaggleData object

Specified by:

getSpecies in interface GaggleData

Returns:

the species of this GaggleData object

setName

public void setName(java.lang.String name)

setSpecies

public void setSpecies(java.lang.String species)

getColumnNames

public java.lang.String[] getColumnNames()

setColumnNames

public void setColumnNames(java.lang.String[] columnNames)

getRowNames

public java.lang.String[] getRowNames()

setRowNames

public void setRowNames(java.lang.String[] rowNames)

getMetadata

public Tuple getMetadata()

Description copied from interface: GaggleData

Every GaggleData object contains a Tuple which can contain optional metadata. The Tuple is a general-purpose object which can hold data in many ways; it is up to the sending and receiving goose to put together and parse out the metadata from the Tuple.

Specified by:

getMetadata in interface GaggleData

Returns:

a Tuple containing optional metadata

setMetadata

public void setMetadata(Tuple metadata)