org.systemsbiology.gaggle.experiment.datamatrix.unitTests
Class LensedDataMatrixTest

java.lang.Object
  TestCase
      org.systemsbiology.gaggle.experiment.datamatrix.unitTests.LensedDataMatrixTest

public class LensedDataMatrixTest
extends TestCase

Constructor Summary

LensedDataMatrixTest(java.lang.String name)

Method Summary

static void	main(java.lang.String[] args)
void	notestSpeedOfGetVisibleMatrix_45101_lines() test the time it takes to get a visible (sub-) matrix from a large matrix after some rows and columns are hidden
void	setUp()
void	tearDown()
void	testAddRow()
void	testColumnEnabling()
void	testColumnOrdering()
void	testColumnTitleLensing() swap twice, disable one column
void	testGetColumn()
void	testGetDataWithOrderingAndEnabling_1() for a 4 row, 3 column matrix: - swap colums 0 and 2; check the first row - disable column 0; check the remaining two columns in row 0 - clear the lens; check that the first row equals that of the underlying matrix
void	testGetDataWithOrderingAndEnabling_2() swap once, disable two columns
void	testGetDataWithOrderingAndEnabling_3() swap twice, equivalent to moving the right-most column two places to the left
void	testGetVisibleMatrix() test the matrices returned at each of these 3 steps - get an unmodified view - select just rows 1 and 2 (implicitly obscuring rows 0 and 3) - disable first data column
void	testRowSelection()
void	testSpeedOfGetVisibleMatrix_2400_lines() test the time it takes to get a visible (sub-) matrix from a 2400 line matrix after some rows and columns are hidden

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LensedDataMatrixTest

public LensedDataMatrixTest(java.lang.String name)

Method Detail

setUp

public void setUp()
           throws java.lang.Exception

Throws:

java.lang.Exception

tearDown

public void tearDown()
              throws java.lang.Exception

Throws:

java.lang.Exception

testColumnEnabling

public void testColumnEnabling()
                        throws java.lang.Exception

Throws:

java.lang.Exception

testColumnOrdering

public void testColumnOrdering()
                        throws java.lang.Exception

Throws:

java.lang.Exception

testGetColumn

public void testGetColumn()
                   throws java.lang.Exception

Throws:

java.lang.Exception

testGetDataWithOrderingAndEnabling_1

public void testGetDataWithOrderingAndEnabling_1()
                                          throws java.lang.Exception

for a 4 row, 3 column matrix: - swap colums 0 and 2; check the first row - disable column 0; check the remaining two columns in row 0 - clear the lens; check that the first row equals that of the underlying matrix

Throws:

java.lang.Exception

testGetDataWithOrderingAndEnabling_2

public void testGetDataWithOrderingAndEnabling_2()
                                          throws java.lang.Exception

swap once, disable two columns

Throws:

java.lang.Exception

testGetDataWithOrderingAndEnabling_3

public void testGetDataWithOrderingAndEnabling_3()
                                          throws java.lang.Exception

swap twice, equivalent to moving the right-most column two places to the left

Throws:

java.lang.Exception

testColumnTitleLensing

public void testColumnTitleLensing()
                            throws java.lang.Exception

swap twice, disable one column

Throws:

java.lang.Exception

testRowSelection

public void testRowSelection()
                      throws java.lang.Exception

Throws:

java.lang.Exception

testGetVisibleMatrix

public void testGetVisibleMatrix()
                          throws java.lang.Exception

test the matrices returned at each of these 3 steps - get an unmodified view - select just rows 1 and 2 (implicitly obscuring rows 0 and 3) - disable first data column

Throws:

java.lang.Exception

testSpeedOfGetVisibleMatrix_2400_lines

public void testSpeedOfGetVisibleMatrix_2400_lines()
                                            throws java.lang.Exception

test the time it takes to get a visible (sub-) matrix from a 2400 line matrix after some rows and columns are hidden

Throws:

java.lang.Exception

notestSpeedOfGetVisibleMatrix_45101_lines

public void notestSpeedOfGetVisibleMatrix_45101_lines()
                                               throws java.lang.Exception

test the time it takes to get a visible (sub-) matrix from a large matrix after some rows and columns are hidden

Throws:

java.lang.Exception

testAddRow

public void testAddRow()
                throws java.lang.Exception

Throws:

java.lang.Exception

main

public static void main(java.lang.String[] args)