org.systemsbiology.gaggle.experiment.readers
Class DataMatrixFileReader

java.lang.Object
  org.systemsbiology.gaggle.experiment.readers.DataMatrixReader
      org.systemsbiology.gaggle.experiment.readers.DataMatrixFileReader

public class DataMatrixFileReader
extends DataMatrixReader

Field Summary

Fields inherited from class org.systemsbiology.gaggle.experiment.readers.DataMatrixReader

path, protocol, uri

Constructor Summary

DataMatrixFileReader(java.lang.String uri)

DataMatrixFileReader(java.lang.String uri, boolean debug)

Method Summary

DataMatrix	get()
protected boolean	hasCorrectTokenCount(java.lang.String[] tokens, int dataColumnCount)
protected void	parseText(java.lang.String rawText)
void	read()

Methods inherited from class org.systemsbiology.gaggle.experiment.readers.DataMatrixReader

getPath, getProtocol

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataMatrixFileReader

public DataMatrixFileReader(java.lang.String uri,
                            boolean debug)

DataMatrixFileReader

public DataMatrixFileReader(java.lang.String uri)

Method Detail

get

public DataMatrix get()
               throws java.lang.Exception

Specified by:

get in class DataMatrixReader

Throws:

java.lang.Exception

read

public void read()
          throws java.lang.Exception

Specified by:

read in class DataMatrixReader

Throws:

java.lang.Exception

parseText

protected void parseText(java.lang.String rawText)
                  throws java.lang.Exception

Throws:

java.lang.Exception

hasCorrectTokenCount

protected boolean hasCorrectTokenCount(java.lang.String[] tokens,
                                       int dataColumnCount)