org.systemsbiology.gaggle.geese.pdfViewer
Class ClusterViewer

java.lang.Object
  org.systemsbiology.gaggle.geese.pdfViewer.ClusterViewer

All Implemented Interfaces:

java.rmi.Remote, Goose

public class ClusterViewer
extends java.lang.Object
implements Goose

Field Summary

protected javax.swing.JFrame	mainFrame
protected javax.swing.JTabbedPane	tabbedPane

Constructor Summary

ClusterViewer(java.lang.String baseUrl)

Method Summary

void	addNewTab(java.lang.String clusterIdAs3DigitString)
void	clearSelections()
void	connectToGaggle()
protected void	createGui()
protected javax.swing.JMenuBar	createMenuBar()
protected javax.swing.JPanel	createScrolledPdfViewer(java.lang.String clusterIdAs3DigitString)
void	doBroadcastList()
void	doExit() Tells the goose to exit (terminate).
void	doHide() Tells the goose to hide itself
void	doShow() Tells the goose to show itself
java.lang.String	getName() Returns the name of the goose.
int	getSelectionCount()
void	handleCluster(java.lang.String source, Cluster cluster) Called when the goose receives a Cluster object
void	handleMatrix(java.lang.String source, DataMatrix matrix) Called when the goose receives a DataMatrix object
void	handleNameList(java.lang.String source, Namelist nameList) Called when the goose receives a NameList object
void	handleNetwork(java.lang.String source, Network network) Called when the goose receives a Network object
void	handleTuple(java.lang.String source, GaggleTuple gaggleTuple) Called when the goose receives a GaggleTuple object
static void	main(java.lang.String[] args)
void	setGeometry(int x, int y, int width, int height)
void	setName(java.lang.String newName) Sets the name of (renames) the goose.
void	update(java.lang.String[] gooseNames) Provides the goose with an updated list of the names of active geese.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mainFrame

protected javax.swing.JFrame mainFrame

tabbedPane

protected javax.swing.JTabbedPane tabbedPane

Constructor Detail

ClusterViewer

public ClusterViewer(java.lang.String baseUrl)

Method Detail

createGui

protected void createGui()

createMenuBar

protected javax.swing.JMenuBar createMenuBar()

addNewTab

public void addNewTab(java.lang.String clusterIdAs3DigitString)

createScrolledPdfViewer

protected javax.swing.JPanel createScrolledPdfViewer(java.lang.String clusterIdAs3DigitString)

connectToGaggle

public void connectToGaggle()

handleNameList

public void handleNameList(java.lang.String source,
                           Namelist nameList)

Description copied from interface: Goose

Called when the goose receives a NameList object

Specified by:

handleNameList in interface Goose

Parameters:

source - Optional string indicating name of source goose

nameList - The NameList object

handleCluster

public void handleCluster(java.lang.String source,
                          Cluster cluster)

Description copied from interface: Goose

Called when the goose receives a Cluster object

Specified by:

handleCluster in interface Goose

Parameters:

source - Optional string indicating name of source goose

cluster - The Cluster object

handleMatrix

public void handleMatrix(java.lang.String source,
                         DataMatrix matrix)

Description copied from interface: Goose

Called when the goose receives a DataMatrix object

Specified by:

handleMatrix in interface Goose

Parameters:

source - Optional string indicating name of source goose

matrix - The DataMatrix object

handleTuple

public void handleTuple(java.lang.String source,
                        GaggleTuple gaggleTuple)

Description copied from interface: Goose

Called when the goose receives a GaggleTuple object

Specified by:

handleTuple in interface Goose

Parameters:

source - Optional string indicating name of source goose

gaggleTuple - The GaggleTuple object

handleNetwork

public void handleNetwork(java.lang.String source,
                          Network network)

Description copied from interface: Goose

Called when the goose receives a Network object

Specified by:

handleNetwork in interface Goose

Parameters:

source - Optional string indicating name of source goose

network - The Network object

getName

public java.lang.String getName()

Description copied from interface: Goose

Returns the name of the goose.

Specified by:

getName in interface Goose

Returns:

the name of the goose

setName

public void setName(java.lang.String newName)

Description copied from interface: Goose

Sets the name of (renames) the goose.

Specified by:

setName in interface Goose

Parameters:

newName - The new name of the goose

doHide

public void doHide()

Description copied from interface: Goose

Tells the goose to hide itself

Specified by:

doHide in interface Goose

doShow

public void doShow()

Description copied from interface: Goose

Tells the goose to show itself

Specified by:

doShow in interface Goose

clearSelections

public void clearSelections()

setGeometry

public void setGeometry(int x,
                        int y,
                        int width,
                        int height)

getSelectionCount

public int getSelectionCount()

doBroadcastList

public void doBroadcastList()

Specified by:

doBroadcastList in interface Goose

doExit

public void doExit()

Description copied from interface: Goose

Tells the goose to exit (terminate).

Specified by:

doExit in interface Goose

update

public void update(java.lang.String[] gooseNames)

Description copied from interface: Goose

Provides the goose with an updated list of the names of active geese. This list includes the name of the goose receiving the list.

Specified by:

update in interface Goose

Parameters:

gooseNames - the names of the currently active geese

See Also:

MiscUtil.updateGooseChooser(javax.swing.JComboBox gooseChooser, String callingGoose, String[] allGeese);

main

public static void main(java.lang.String[] args)