This is an ISB goose, simple in design, intended for displaying and exploring networks. Run it here.
Some features of Cytoscape:
Cytoscape uses SIF or GML files. A SIF file can be as simple as three tab delimited columns as shown here:
VNG6476G pdass VNG0016H VNG6476G pdass VNG0017H VNG6476G pdass VNG0019H ...
The first and third columns become nodes in the network, while the second column describes a connection or interaction between two nodes. See the Cytoscape website for more details.
NoteWe plan to adopt Cytoscape 2.5 in the Gaggle as soon as the CyGoose plugin is updated to use the current Gaggle API; we are using Cytoscape 1.1 in the meantime.
|© 2006, Institute for Systems Biology, All Rights Reserved|