Demos

Case studies

• Finding protein-DNA binding sites
  Discovery of a conditionally active promoter inside a coding sequence of the succinate dehydrogenase operon with MeDiChI
• Bacillus anthracis RNA-seq
  Inspection of transcriptome structure through interactive exploration of 350MB of next-generation sequencing data from Structure and complexity of a bacterial transcriptome

Tutorials

Transcriptome structure of E. coli, explored through tiling array data with step-by-step instructions and screencast

Screencast: Multi-dimesional exploration of P-D interactions

More examples

Launch demo genome browser with Halobacterium salinarum tiling array and ChIP-chip data. Other web start packages containing prepackaged data from H. salinarum can be found on the Halo Gaggle page.

DNA binding locations of CTCF and STAG1 in Human.

Launch empty genome browser.

Applications

GGB has been used in several studies of transcriptome structure, proteomicsand RNA-seq data. See a partial list of applications with screenshots.