Gaggle Components
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Gaggle Genome Browser

Domain model and data flow

A GGB dataset consists of sequences, tracks, and features. A set of sequences defines the coordinate system on which data will be plotted. Features are collected in tracks and have location on the genome. Any type of data that can be related to a position on the genome can be plotted in the genome browser. Datasets are stored in SQLite database files with a particular schema.

Object Model (click to zoom)

Attributes

Datasets, sequences, and tracks have key/value pairs mapped to them. For tracks, attributes are used to configure renderers which visually encode track data using shapes and colors.

For more information, see the paper:

Integration and visualization of systems biology data in context of the genome
J Christopher Bare, Tie Koide, David J Reiss, Dan Tenenbaum and Nitin S Baliga
BMC Bioinformatics 2010, 11:382 doi:10.1186/1471-2105-11-382
Published:19 July 2010

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