Documentation

Help is available on several aspects of the genome browser:

• getting started
• creating a new project
• importing data into the genome browser
• exchanging data with other tools through the gaggle
• R interoperability
• performance measurements

Help

For questions and support contact the Gaggle mailing lists.

For developers

See information for developers for links to source, javadocs and developer documentation.

Data

For users local to ISB, several data sets can be found at bragi:/local/apache2/docs/gaggle/docs/geese/genomebrowser/hbgb/. Many public data sets are available:

• Transcriptome structure for DOE/Archaea
• H. salinarum
• Thalassiosira pseudonana
• Methanococcus maripaludis S2
• ChIP-chip and Bacillus anthracis RNA-seq demos
• More applications of the Gaggle Genome Browser

Wiki

The wiki provides more information.

Bugs / Feature requests

Please submit bugs and feature requests to our issue tracker. Anyone can create an account.

Applications

GGB has been used in several studies of transcriptome structure, proteomicsand RNA-seq data. See a partial list of applications with screenshots.

Back to GGB