Desulfovibrio vulgaris Hildenborough transcriptome

In the paper Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough, the transcriptome structure of DvH was mapped using tiling arrays and RNA-seq. We've loaded this data into the Gaggle Genome Browser, which can be started by clicking below:

START Gaggle Genome Browser

Legend

Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.
Price MN, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP.
J Bacteriol. 2011 Aug 12.

Data can be found in GEO at: GSE29560

Supplemental data

Related links

Transcriptome plus gene expression

An alternate version including gene expression and mutant library markers.

START Gaggle Genome Browser (with gene expression heatmap)

extract_expression_data.R has some R code that was used to extract this data from cmonkey output.