Gaggle Components
Data Standards

Thalassiosira pseudonana Gaggle (2007-04)


  1. Start an optional Gaggle Boss
  2. Annotation
    • JGI links for Thaps protein IDs in filtered set
  3. Proteomics
    • Proteomics data in the dmv
  4. Sequence
  5. Genome Browser
  6. Analysis Tools
    • MeV MultiExperiment Viewer microarray data analysis tool.
    • R statistics package
      • If R and the Gaggle package are not installed, see these instructions.
      • Connect R to the Gaggle, as described in 'Startup'.
        • At the R prompt, type these commands (in R 2.4.x):
      • See the cribsheet for quick instructions on how to accomplish common tasks using R and the R goose.
    • Firegoose
      • If the Firegoose extension is not installed, see these instructions.
      • Start the Firefox browser.
      • Use the Paster Application to paste data into Firegoose.
    • Genome Browser
      • The genome browser is a tool for visualizing data plotted against coordinates on the genome. Tiling arrays and ChIP-chip data are a couple use cases.
    • BioTapestry
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